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S7847 CpGenome Turbo Bisulfite Modification Kit

S7847
50 reactions  
Purchase on Sigma-Aldrich

Descripción

Replacement Information
Description
Catalogue NumberS7847
Trade Name
  • CpGenome
  • Chemicon
DescriptionCpGenome Turbo Bisulfite Modification Kit
OverviewThe CpGenome Turbo Bisulfite Modification Kit is designed to simplify and streamline the bisulfite modification process. This kit contains all key reagents for bisulfite modification to allow for the recovery of modified DNA in about 90 minutes as compared to 3-16 hours for similar kits. This rapid, but effective approach employs a proprietary mixture of modification reagents to permit shorter conversion times. This unique mixture of reagents allows for complete conversion of unmethylated cytosines while minimizing damage to the input DNA. After modification, and desulfonation, the modifed DNA is purified and eluted using the provided spin columns resulting in purified, bisulfite-modifed DNA that is ready to use in a wide variety of downstream applications.

Key Features
  • Input sample to modified DNA in 90 minutes
  • Conversion efficiencies of 99.9%
  • Effective with as little as 1 ng input DNA
  • Recover modified DNA in as little as 25 microliters
  • Proven performance in multiple downstream applications
Materials Required but Not DeliveredEquipment and Supplies
  • Thermal cycler, heat block, or water bath
  • Microcentrifuge (capable of 12,000 x g)
  • Screw-cap microcentrifuge tubes, 1.5-2.0 mL
  • Narrow range pH indicator paper (pH 0-6, three different indicators per strip, and/or pH 4-7, one indicator per strip) or a dedicated pH electrode).
  • Pipettes and pipette tips (aerosol barrier tips are suggested to minimize potential cross contamination).
  • Analytical scale or balance

Reagents
  • Nuclease-free water
  • 96-100% Molecular Biology Grade Ethanol
  • 12 N HCl
  • 3 N NaOH
Background InformationMethylation of cytosines located 5' to guanosine is known to have a profound effect on the expression of many eukaryotic genes. In normal cells methylation occurs predominantly in CG-poor regions, while CG-rich areas, called CpG-islands remain unmethylated. The exceptions are the extensive methylation of CpG islands associated with transcriptional inactivation of regulatory regions of imprinted genes and genes on the inactive X-chromosome of females. Aberrant methylation of normally unmethylated CpG islands has been documented as a relatively frequent event in immortalized and transformed cells and has been associated with transcriptional inactivation of defined tumor suppressor genes in human cancers.

Several methods have been developed to determine the methylation status of cytosine. These include the use of antibodies or protein methyl binding domains, digestion with methylation sensitive, insensitive, or dependent restriction enzymes as in restriction landmark genomic scanning (RLGS), oligonucleotide array hybridization, bisulfite genomic DNA sequencing and Methylation Specific PCR (MSP).

Genomic DNA sequencing, although time consuming and labor intensive, offers a more universal detection method. MSP is an established technology for the monitoring of abnormal gene methylation in selected gene sequences. Utilizing small amounts of DNA, this procedure offers sensitive and specific detection of 5-methylcytosine in promoters. It is being exploited to define tumor suppressor gene function, and to provide a new strategy for early tumor detection by interrogating DNA derived from tissues and bodily fluids.

The initial step of both bisulfite genomic sequencing and MSP is to perform a bisulfite modification of the DNA sample. In the bisulfite reaction, all unmethylated cytosines are deaminated and sulfonated, converting them to uracils, while 5-methylcytosines remain unaltered. Thus, the sequence of the treated DNA will differ depending on whether the DNA is originally methylated or unmethylated. Also, the initially complementary DNA strands will no longer be complementary after cytosine conversion. Primers for use in MSP can be designed to specifically amplify either a bisulfite-sensitive, unmethylated strand or a bisulfite-resistant, methylated strand, based upon these chemically-induced differences. Millipore offers a selection of CpG Wiz® MSP kits to enable gene-specific analysis by MSP. To learn more about CpG Wiz kits and MSP technology Click here
References
Product Information
Components
  • Bisulfite Conversion Reagent 1
  • Bisulfite Conversion Reagent 2
  • Bisulfite Reagent Diluent
  • DNA Binding Buffer
  • Wash Buffer NT3 (Concentrate)*
  • Elution Buffer NE
  • Modified DNA Purification Columns
  • 2 mL Collection Tubes
  • *DNA Wash Buffer requires the addition of 100% Ethanol
HS Code3822 19 90
Quality LevelMQ100
Applications
ApplicationThe CpGenome Turbo Bisulfite Modification Kit is designed to simplify & streamline the bisulfite modification process. In just 90 minutes go from DNA sample to bisulfite converted DNA ready for analysis.
Application NotesFor MSP primer design, please use the MethPrime software package. Click here
Biological Information
Physicochemical Information
Dimensions
Materials Information
Toxicological Information
Safety Information according to GHS
Safety Information
Product Usage Statements
Usage Statement
  • Unless otherwise stated in our catalog or other company documentation accompanying the product(s), our products are intended for research use only and are not to be used for any other purpose, which includes but is not limited to, unauthorized commercial uses, in vitro diagnostic uses, ex vivo or in vivo therapeutic uses or any type of consumption or application to humans or animals.
Storage and Shipping Information
Packaging Information
Material Size50 reactions
Transport Information
Supplemental Information
Specifications
Global Trade Item Number
Número de referencia GTIN
S7847 04053252746826

Documentation

CpGenome Turbo Bisulfite Modification Kit Ficha datos de seguridad (MSDS)

Título

Ficha técnica de seguridad del material (MSDS) 

Referencias bibliográficas

Visión general referenciasPub Med ID
Characterization of induced tissue-specific stem cells from pancreas by a synthetic self-replicative RNA.
Miyagi-Shiohira, C; Nakashima, Y; Kobayashi, N; Saitoh, I; Watanabe, M; Noguchi, H
Sci Rep  8  12341  2018

Mostrar resumen
30120295 30120295

Folleto

Cargo
Advancing cancer research: From hallmarks & biomarkers to tumor microenvironment progression
CpGenome™ Turbo Bisulfite Modification Kit

Licencias necesarias e Información técnica

Cargo
White Paper - The Message in the Marks: Deciphering Cancer Epigenetics

Manuales del usuario

Cargo
CpGenome¿ Turbo Bisulfite Modification Kit (50 Reactions) Manual